05/28/2019 Data shape changes to support the Kids First Data Resource Portal 04/29/2019 Data shape changes to support the Kids First Data Resource Portal 02/05/2019 Major release for back end structural changes in preparation to release family-based joint genotyping files. Removed 37 participants & data for further genomic QC review. Full details can be found on this sheet (linked here) 11/05/2018 Published major release to account for underlying data model changes to add method_of_sample_procurement on biospecimen and to make HPO terms searchable by their standard name alongside their code. 10/11/2018 Initial portal release >
先天性疾病
孩子第一: 青少年特发性脊柱侧弯
NIH X01 项目摘要 - 乔纳森·里奥斯, PI
对齐读取
单独的 gVCF
发布日期
十月 12, 2018
05/28/2019 Data shape changes to support the Kids First Data Resource Portal 04/29/2019 Data shape changes to support the Kids First Data Resource Portal 04/23/2019 Added back GRCh38 harmonized data for all samples. This adds back the missing reads in the q-arm of ChrX Updated the list of samples hidden that are undergoing further genomic QC Review (listed here) 02/08/2019 Removed all GRCh38 harmonized data per latest Known Issue impacted by the missing reads in the q-arm of ChrX 02/05/2018 Major release for back end structural changes in preparation to release family-based joint genotyping files Removed 50 participants & data for further genomic QC review. Full details can be found on this sheet (listed here) 11/05/2018 Published major release to account for underlying data model changes to add method_of_sample_procurement on biospecimen and to make HPO terms searchable by their standard name alongside their code 10/11/2018 Released data model change to move Consent Type from Participant to Biospecimen 10/05/2018 Mapped the harmonized files created by the DRC to the source genomic files’ sequencing experiment. This allows both source & harmonized files to be searchable when filtering on Experiment Strategy. 09/18/2018 Fixed participant with missing family ID. PT_BX9B2A7T now has the correct family ID
Updated participant consent types to align with dbGaP 09/10/2018 Initial version release of this study as part of the Kids First Data Resource Center. Latest dbGaP release notes (linked here) >
先天性疾病
孩子第一: 颅神经神经缺失综合征
NIH X01 项目摘要 - 伊丽莎白·恩格尔, PI
对齐读取
单独的 gVCF
发布日期
八月 23, 2018
癌症
孩子第一: 尤文肉瘤 – 遗传风险
NIH X01 项目摘要 - 约书亚希夫曼, PI
对齐读取
单独的 gVCF
发布日期
六月 18, 2018
Data shape changes to support the Kids First Data Resource Portal 05/24/2019 Initial release of family-based VCFs
Data shape changes to support the Kids First Data Resource Portal
Updated consents & ACLS in accordinace with latest dbGaP release
Added in FY16 samples in coordination with latest dbGaP release
Added in GRCh38 harmonized data for both FY15 & FY16 samples. This adds back the missing reads in the q-arm of ChrX 02/08/2019 Removed all GRCh38 harmonized data per latest Known Issue impacted by the missing reads in the q-arm of ChrX 02/05/2019 Major release for back end structural changes in preparation to release family-based joint
genotyping files 11/05/2018 Published major release to account for underlying data model changes to add method_of_sample_procurement on biospecimen and to make HPO terms searchable by their standard name alongside their code 10/11/2018 Released data model change to move Consent Type from Participant to Biospecimen 10/05/2018 Mapped the harmonized files created by the DRC to the source genomic files’ sequencing experiment. This allows both source & harmonized files to be searchable when filtering on Experiment Strategy. 09/18/2018 The study was successfully decoupled from its parent study. As part of this, the data is now downloadable from the portal for those who have been granted dbGaP access. Updated participant consent types to align with dbGaP. 09/10/2018 Initial versioned release of this study as part of the Kids First Data Resource Center
https://commonfund.nih.gov/kidsfirst/2015X01projects#Seidman >
先天性疾病
孩子第一: 先天性心脏缺陷
NIH X01 项目摘要 - 克里斯汀·赛德曼, PI
对齐读取
单独的 gVCF
基于家庭的 VCF
发布日期
六月 18, 2018
06/21/2019 Removed family-based VCF for family GMKF0695 containing participants PA2026, PA2028, PA2027 as one participant had genomic QC issues 05/28/2019 Data shape changes to support the Kids First Data Resource Portal 05/24/2019 Initial release of family-based VCFs 04/29/2019 Data shape changes to support the Kids First Data Resource Portal 04/10/2019 Added additional samples to the study in conjunction with dbGaP release Added back harmonized data for the files removed on 2/8/19 02/08/2019 Removed the following GRCh38 harmonized files per latest Known Issue impacted by the missing reads in the q-arm of ChrX (listed here) 02/05/2019 Major release for back end structural changes in preparation to release family-based joint genotyping files Removed small number of participants for further genomic QC review (listed here) 11/05/2018 Originally IA3006 was proband with parents IA3004 and IA3005. Now, IA3004 is proband with parents IA3005 and IA3006
Published major release to account for underlying data model changes to add method_of_sample_procurement on biospecimen and to make HPO terms searchable by their standard name alongside their code. 10/11/2018 Released data model change to move Consent Type from Participant to Biospecimen. 10/05/2018 Mapped the harmonized files created by the DRC to the source genomic files’ sequencing experiment. This allows both source & harmonized files to be searchable when filtering on Experiment Strategy. 09/18/2018 Removed the following biospecimens due to QC issues found during genomic data review.
External Participant & Sample ID -> Exclusion Reason
MD0031 -> Uncertain Identity of samples
MD0032 -> Uncertain Identity of samples
MD0033 -> Uncertain Identity of samples
MD0280 -> Uncertain Identity of samples
MD0281 -> Uncertain Identity of samples
MD0282 -> Uncertain Identity of samples
PA2063 -> Uncertain identity of sample
PA2027 -> Uncertain identity of sample
PA2200 -> High missing rate
PA2254 -> Duplicate of another sample
IA2650 -> Uncertain identity of samples
IA2651 -> Uncertain identity of samples
IA2652 -> Uncertain identity of samples
IA2836 -> Uncertain identity of samples
IA2837 -> Uncertain identity of samples
IA2838 -> Uncertain identity of samples
IA4062 -> High missing rate
MD3181 -> High Het/Hom ratio
IA4019 -> High missing rate
IA4022 -> High missing rate
IA3038 -> Definitely unrelated to offspring
IA4054 -> High missing rate 09/10/2018 Initial versioned release of this study as part of the Kids First Data Resource Center. Latest dbGaP release notes found here. >